The science behind the software.

A Unified, Cross-Platform Framework for Automatic GUI and Plugin Generation in Structural Bioinformatics and Beyond

Sikao Guo, Edoardo Sarti, and Frédéric Cazals

My contribution: Framework design, implementation, platform-generator development, examples, and manuscript writing.

Transforming Macromolecular Structures into Simulations of Self-Assembly with ioNERDSS

Yue Moon Ying, Mankun Sang, Gabriel Au, Smriti Chhibber, Yufeng Du, Jonathan A. Fischer, Samuel L. Foley, Sikao Guo, Ian Herzog-Pohl, Zixiu Liu, Hannah Roscom, Hassan Sohail, Sho S. Takeshita, and Margaret E. Johnson

My contribution: Structure-processing workflows, software development, and validation.

Parallelization of Particle-Based Reaction–Diffusion Simulations Using MPI

Sikao Guo, Nenad Korolija, Kent Milfeld, Adip Jhaveri, Mankun Sang, Yue Moon Ying, and Margaret E. Johnson

My contribution: Lead software development, parallel algorithm design, validation, benchmarking, analysis, and writing.

Dynamin1 Long- and Short-Tail Isoforms Exploit Distinct Recruitment and Spatial Patterns to Form Endocytic Nanoclusters

Anmin Jiang, Kye Kudo, Rachel S. Gormal, Sevannah Ellis, Sikao Guo, et al.

My contribution: Mathematical modeling, simulation, quantitative analysis, and interpretation.

Structure of the HIV Immature Lattice Allows for Essential Lattice Remodeling within Budded Virions

Sikao Guo, Ipsita Saha, Saveez Saffarian, and Margaret E. Johnson

My contribution: Modeling, simulation, formal analysis, investigation, visualization, methodology, and writing.

Temporal Control by Cofactors Prevents Kinetic Trapping in Retroviral Gag Lattice Assembly

Yian Qian, Daniel Evans, Bhavya Mishra, Yiben Fu, Zixiu H. Liu, Sikao Guo, and Margaret E. Johnson

Secretion-Catalyzed Assembly of Protein Biomaterials on a Bacterial Membrane Surface

Qi Xie, Sea On Lee, Nitya Vissamsetti, Sikao Guo, Margaret E. Johnson, and Stephen D. Fried

Large Self-Assembled Clathrin Lattices Spontaneously Disassemble without Sufficient Adaptor Proteins

Si-Kao Guo, Alexander J. Sodt, and Margaret E. Johnson

My contribution: Conceptualization, modeling, simulation, formal analysis, validation, visualization, and writing.