Publications Using NERDSS

• Jhaveri, A., Loggia, S., Qian, Y., & Johnson, M.E.* Discovering optimal kinetic pathways for self-assembly using automatic differentiation. Submitted, (2023).
• Xie, Q., Lee, S.O., Vissamsetti, N., Guo, S., Johnson, M.E., Fried, S.D. Secretion-Catalyzed Assembly of Protein Biomaterials on a Bacterial Membrane Surface. Angewantde Chemie, e202305178 (2023).
• Qian, Y., Evans, D., Mishra, B., Fu, Y., Liu, Z., Guo, S. & Johnson, M.E.* Temporal control by co-factors prevents kinetic trapping in retroviral Gag lattice assembly Biophysical Journal, 122, 1-18. (2023) bioRxiv version
• Guo, S., Saha, I., Saffarian, S., & Johnson, M.E.* Structure of the HIV immature lattice allows for essential lattice remodeling within budded virions. eLife 84881 (2023). bioRxiv version
• Guo, S., Sodt, A.J., & Johnson, M.E.* Large self-assembled clathrin lattices spontaneously disassemble without sufficient adaptor proteins. PLoS Comp. Biol. 18, e1009969 (2022).